Kalinowski, J. ; Foreman, E. S. ; Kapnas, K. M. ; Murray, C. ; Rasanen, M. ; R Gerber, B. .
Dynamics And Spectroscopy Of Ch2Oo Excited Electronic States.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS 2016,
18, 10941-10946.
AbstractThe excited states of the Criegee intermediate CH2OO are studied in molecular dynamics simulations using directly potentials from multi-reference perturbation theory (MR-PT2). The photoexcitation of the species is simulated, and trajectories are propagated in time on the excited state. Some of the photoexcitation events lead to direct fragmentation of the molecule, but other trajectories describe at least several vibrations in the excited state, that may terminate by relaxation to the ground electronic state. Limits on the role of non-adiabatic contributions to the process are estimated by two different simulations, one that forces surface-hopping at potential crossings, and another that ignores surface hopping altogether. The effect of non-adiabatic transitions is found to be small. Spectroscopic implications and consequences for the interpretation of experimental results are discussed.
Roy, T. Kanchan; Sharma, R. ; R Gerber, B. .
First-Principles Anharmonic Quantum Calculations For Peptide Spectroscopy: Vscf Calculations And Comparison With Experiments.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS 2016,
18, 1607-1614.
AbstractFirst-principles quantum calculations for anharmonic vibrational spectroscopy of three protected dipeptides are carried out and compared with experimental data. Using hybrid HF/MP2 potentials, the Vibrational Self-Consistent Field with Second-Order Perturbation Correction (VSCF-PT2) algorithm is used to compute the spectra without any ad hoc scaling or fitting. All of the vibrational modes (135 for the largest system) are treated quantum mechanically and anharmonically using full pair-wise coupling potentials to represent the interaction between different modes. In the hybrid potential scheme the MP2 method is used for the harmonic part of the potential and a modified HF method is used for the anharmonic part. The overall agreement between computed spectra and experiment is very good and reveals different signatures for different conformers. This study shows that first-principles spectroscopic calculations of good accuracy are possible for dipeptides hence it opens possibilities for determination of dipeptide conformer structures by comparison of spectroscopic calculations with experiment.
Knaanie, R. ; Sebek, J. ; Tsuge, M. ; Myyllys, N. ; Khriachtchev, L. ; Rasanen, M. ; Albee, B. ; Potma, E. O. ; R Gerber, B. .
Infrared Spectrum Of Toluene: Comparison Of Anharmonic Isolated-Molecule Calculations And Experiments In Liquid Phase And In A Ne Matrix.
JOURNAL OF PHYSICAL CHEMISTRY A 2016,
120, 3380-3389.
AbstractFirst-principles anharmonic calculations are carried out for the CH stretching vibrations of isolated toluene and compared with the experimental infrared spectra of isotopologues of toluene in a Ne matrix at 3 K and of liquid toluene at room temperature. The calculations use the vibrational self-consistent field method and the B3LYP potential surface. In general, good agreement is found between the calculations and experiments. However, the spectrum of toluene in a Ne matrix is more complicated than that predicted theoretically. This distinction is discussed in terms of matrix-site and resonance effects. Interestingly, the strongest peak in the CH stretching spectrum has similar widths in the liquid phase and in a Ne matrix, despite the very different temperatures. Implications of this observation to the broadening mechanism are discussed. Finally, our results show that the B3LYP potential offers a good description of the anharmonic CH stretching band in toluene, but a proper description of matrix-site and resonance effects remains a challenge.
Cohen, A. ; Gerber, R. Benny.
A Noble-Gas Hydride In A Nitrogen Medium: Structure, Spectroscopy, And Intermolecular Vibrations Of Hxebr@(N-2)(22).
JOURNAL OF PHYSICAL CHEMISTRY A 2016,
120, 3372-3379.
AbstractNoble-gas hydrides have been extensively studied in noble gas matrices. However, little is known on their stability and properties in molecular hosts. Here, HXeBr in the N-2 environment is modeled at the B3LYP-D level of theory in a complete single shell of 22 N-2 molecules. The system is compared to similar models of HXeBr in CO2 and Xe clusters. The optimized structure of (HXeBr)@(N-2)(22) is of low symmetry and is highly anisotropic. None of the N-2 molecules are freely rotating, and the host molecules are not symmetrically positioned with respect to the HXeBr axis. The axes of the N-2 molecules are nonuniformly distributed. The computed anharmonic H-Xe stretching frequency of HXeBr in the N-2 cluster is in good accord with the experimental value. The soft mode frequencies of the cluster including both intermolecular vibrations and librations, have a broad distribution that ranges from 8.7 to 107 cm(-1). It is expected that these findings and specifically, the single-shell model, may shed light also on the local structure and vibrations of other impurities in a molecular media.